Models

The PGK, GAPDH, TPI and FBPAase were modelled together using the individual rate equations. Closed system.

The Assmus model taken from JWS Online at - http://jjj.mib.ac.uk/models/assmus/

The 2nd version has been modified, to demonstrate use of the BiVeS tool for comparison ( https://sems.uni-rostock.de/projects/bives/ )

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This model is for a paper that examines whether the in vivo behavior of yeast glycolysis can be understood in terms of the in vitro kinetic properties of the constituent enzymes. In non-growing, anaerobic, compressed Saccharomyces cerevisiae the values of the kinetic parameters of most glycolytic enzymes were determined. For the other enzymes appropriate literature values were collected. By inserting these values into a kinetic model for glycolysis, fluxes and metabolites were calculated. Under ...

Detailed kinetic model for glycolysis of the trophozoite stage of Plasmodium falciparum

Detailed kinetic model for glycolysis of L. lactis. The model is basically the same model as that published by Hoefnagel et al 2002 (Mol. Biol. Reports 29, 157-161). The change made to the model is to make external glucose a variable such that a glucose pulse can be simulated.

MCA of Glycerol Synthesis in Saccharomyces cerevisiae