{"name":"frim1","profile":"https://inrae.github.io/ODAM/json-schema/odam-data-package.json","datapackage_version":"1.0", "keywords":["Experimental Data Tables", "ODAM"],"licenses":[{"name":"ODC-BY-1.0", "path":"https://opendatacommons.org/licenses/by/", "title":"Open Data Commons Attribution License 1.0"}],"resources":[{"path":"https://pmb-bordeaux.fr/getdata/tsv/frim1/plants", "profile": "https://inrae.github.io/ODAM/json-schema/odam-data-resource.json", "name":"plants", "title":"Plant features", "identifier":"PlantID", "cv_term": { "label":"whole plant", "path":"http://purl.obolibrary.org/obo/PO_0000003" }, "schema": {"fields": [{"name":"PlantID", "type":"string", "title":"Plant identifier", "cv_term": { "label":"identifier", "path":"http://edamontology.org/data_0842" }, "constraints": { "required":true }},{"name":"Rank", "type":"string", "title":"Row of the invidual plant on the table", "cv_term": { "label":"Row", "path":"http://purl.obolibrary.org/obo/AGRO_00000155" }, "constraints": { "required":false }},{"name":"PlantNum", "type":"number", "title":"Code identifier of the individual plant", "constraints": { "required":false }},{"name":"Treatment", "type":"string", "title":"Treatment applied on plants", "cv_term": { "label":"environmental factor", "path":"http://www.ebi.ac.uk/efo/EFO_0000469" }, "constraints": { "required":false }}],"primaryKey": [ "PlantID" ], "foreignKeys": [ { "fields": "PlantID", "reference": {"resource": "samples", "fields": "PlantID"} }],"categories": [{"name":"identifier","fields":["PlantID"]},{"name":"factor","fields":["Treatment"]},{"name":"qualitative","fields":["Rank"]}]},"dialect": {"caseSensitiveHeader": true, "delimiter":"\t", "decimalChar":".", "lineTerminator":"\n", "header":true, "doubleQuote": false, "skipInitialSpace": true, "commentChar":"#" },"encoding":"utf-8", "format":"csv", "mediatype":"text/tab-separated-values", "missingValues":[""]},{"path":"https://pmb-bordeaux.fr/getdata/tsv/frim1/samples", "profile": "https://inrae.github.io/ODAM/json-schema/odam-data-resource.json", "name":"samples", "title":"Sample features", "identifier":"SampleID", "obtainedFrom":"plants", "joinkey":"PlantID", "cv_term": { "label":"organ harvesting", "path":"http://purl.obolibrary.org/obo/OBI_1110046" }, "schema": {"fields": [{"name":"SampleID", "type":"number", "title":"Pool of several harvests", "cv_term": { "label":"identifier", "path":"http://edamontology.org/data_0842" }, "constraints": { "required":true }},{"name":"PlantID", "type":"string", "title":"Plant identifier", "cv_term": { "label":"identifier", "path":"http://edamontology.org/data_0842" }, "constraints": { "required":true }},{"name":"Truss", "type":"string", "title":"Position on the stem of the truss", "cv_term": { "label":"stem node", "path":"http://purl.obolibrary.org/obo/PO_0020141" }, "constraints": { "required":false }},{"name":"DevStage", "type":"string", "title":"fruit development stage", "cv_term": { "label":"fruit development stage", "path":"http://purl.obolibrary.org/obo/PO_0001002" }, "constraints": { "required":false }},{"name":"FruitAge", "type":"string", "title":"fruit age", "unit":"dpa", "cv_term": { "label":"fruit development stage", "path":"http://purl.obolibrary.org/obo/PO_0001002" }, "constraints": { "required":false }},{"name":"HarvestDate", "type":"string", "title":"Harvest date", "cv_term": { "label":"harvesting date", "path":"http://aims.fao.org/aos/agrovoc/c_29464" }, "constraints": { "required":false }},{"name":"HarvestHour", "type":"string", "title":"Harvest hour", "cv_term": { "label":"harvesting date", "path":"http://aims.fao.org/aos/agrovoc/c_29464" }, "constraints": { "required":false }},{"name":"FruitPosition", "type":"string", "title":"Poistion on the truss of the fruit", "cv_term": { "label":"Fruit position", "path":"http://purl.obolibrary.org/obo/TO_1000011" }, "constraints": { "required":false }},{"name":"FruitDiameter", "type":"number", "title":"Fruit diameter", "unit":"mm", "cv_term": { "label":"Diameter", "path":"http://aims.fao.org/aos/agrovoc/c_16072" }, "constraints": { "required":false }},{"name":"FruitHeight", "type":"number", "title":"Fruit height", "unit":"mm", "cv_term": { "label":"Height", "path":"http://aims.fao.org/aos/agrovoc/c_3536" }, "constraints": { "required":false }},{"name":"FruitFW", "type":"number", "title":"Fruit Fresh Weight", "unit":"g", "cv_term": { "label":"Weight", "path":"http://aims.fao.org/aos/agrovoc/c_8349" }, "constraints": { "required":false }},{"name":"FruitDW", "type":"number", "title":"Fruit Dry Weight", "unit":"g", "cv_term": { "label":"Weight", "path":"http://aims.fao.org/aos/agrovoc/c_8349" }, "constraints": { "required":false }},{"name":"DW", "type":"number", "title":"Percentage of dry matter , measured after lyophilisation", "unit":"% DW", "constraints": { "required":false }}],"primaryKey": [ "SampleID" ], "foreignKeys": [ { "fields": "SampleID", "reference": {"resource": "aliquots", "fields": "SampleID"} },{ "fields": "SampleID", "reference": {"resource": "pools", "fields": "SampleID"} }],"categories": [{"name":"identifier","fields":["SampleID"]},{"name":"factor","fields":["DevStage","FruitAge"]},{"name":"quantitative","fields":["FruitDiameter","FruitHeight","FruitFW","FruitDW","DW"]},{"name":"qualitative","fields":["Truss"]}]},"dialect": {"caseSensitiveHeader": true, "delimiter":"\t", "decimalChar":".", "lineTerminator":"\n", "header":true, "doubleQuote": false, "skipInitialSpace": true, "commentChar":"#" },"encoding":"utf-8", "format":"csv", "mediatype":"text/tab-separated-values", "missingValues":[""]},{"path":"https://pmb-bordeaux.fr/getdata/tsv/frim1/aliquots", "profile": "https://inrae.github.io/ODAM/json-schema/odam-data-resource.json", "name":"aliquots", "title":"Aliquots features", "identifier":"AliquotID", "obtainedFrom":"samples", "joinkey":"SampleID", "cv_term": { "label":"organ harvesting", "path":"http://purl.obolibrary.org/obo/OBI_1110046" }, "schema": {"fields": [{"name":"SampleID", "type":"number", "title":"Sample identifier", "cv_term": { "label":"identifier", "path":"http://edamontology.org/data_0842" }, "constraints": { "required":true }},{"name":"AliquotID", "type":"number", "title":"Aliquot Identifier", "cv_term": { "label":"identifier", "path":"http://edamontology.org/data_0842" }, "constraints": { "required":true }}],"primaryKey": [ "AliquotID" ], "foreignKeys": [ { "fields": "AliquotID", "reference": {"resource": "cellwall_metabo", "fields": "AliquotID"} },{ "fields": "AliquotID", "reference": {"resource": "cellwall_metaboFW", "fields": "AliquotID"} },{ "fields": "AliquotID", "reference": {"resource": "activome", "fields": "AliquotID"} },{ "fields": "AliquotID", "reference": {"resource": "plato_hexosesP", "fields": "AliquotID"} },{ "fields": "AliquotID", "reference": {"resource": "lipids_AG", "fields": "AliquotID"} },{ "fields": "AliquotID", "reference": {"resource": "AminoAcid", "fields": "AliquotID"} }],"categories": [{"name":"identifier","fields":["AliquotID"]}]},"dialect": {"caseSensitiveHeader": true, "delimiter":"\t", "decimalChar":".", "lineTerminator":"\n", "header":true, "doubleQuote": false, "skipInitialSpace": true, "commentChar":"#" },"encoding":"utf-8", "format":"csv", "mediatype":"text/tab-separated-values", "missingValues":[""]},{"path":"https://pmb-bordeaux.fr/getdata/tsv/frim1/cellwall_metabo", "profile": "https://inrae.github.io/ODAM/json-schema/odam-data-resource.json", "name":"cellwall_metabo", "title":"Cell wall Compound quantifications", "identifier":"AliquotID", "obtainedFrom":"aliquots", "joinkey":"AliquotID", "cv_term": { "label":"chemical entity", "path":"http://purl.obolibrary.org/obo/CHEBI_24431" }, "schema": {"fields": [{"name":"AliquotID", "type":"number", "title":"Aliquot Identifier", "cv_term": { "label":"identifier", "path":"http://edamontology.org/data_0842" }, "constraints": { "required":true }},{"name":"MassBefore", "type":"number", "title":"m av.extraction", "unit":"g", "cv_term": { "label":"Weight", "path":"http://aims.fao.org/aos/agrovoc/c_8349" }, "constraints": { "required":false }},{"name":"MassMIA", "type":"number", "title":"masse MIA", "unit":"g", "cv_term": { "label":"Weight", "path":"http://aims.fao.org/aos/agrovoc/c_8349" }, "constraints": { "required":false }},{"name":"RDT", "type":"number", "title":"Rdt", "unit":"% MIA/DW", "cv_term": { "label":"efficiency", "path":"http://aims.fao.org/aos/agrovoc/c_2491" }, "constraints": { "required":false }},{"name":"Starch1", "type":"number", "title":"Dosage amidon", "unit":"%poids/MIA", "cv_term": { "label":"starch", "path":"http://purl.obolibrary.org/obo/CHEBI_28017" }, "constraints": { "required":false }},{"name":"Starch2", "type":"number", "title":"amidon", "unit":"g/gDW", "cv_term": { "label":"starch", "path":"http://purl.obolibrary.org/obo/CHEBI_28017" }, "constraints": { "required":false }},{"name":"RHAMNOSE", "type":"number", "title":"RHAMNOSE", "cv_term": { "label":"rhamnose", "path":"http://purl.obolibrary.org/obo/CHEBI_26546" }, "constraints": { "required":false }},{"name":"ARABINOSE", "type":"number", "title":"ARABINOSE", "cv_term": { "label":"arabinose", "path":"http://purl.obolibrary.org/obo/CHEBI_22599" }, "constraints": { "required":false }},{"name":"XYLOSE", "type":"number", "title":"XYLOSE", "cv_term": { "label":"xylose", "path":"http://purl.obolibrary.org/obo/CHEBI_18222" }, "constraints": { "required":false }},{"name":"MANNOSE", "type":"number", "title":"MANNOSE", "cv_term": { "label":"mannose", "path":"http://purl.obolibrary.org/obo/CHEBI_37684" }, "constraints": { "required":false }},{"name":"GALACTOSE", "type":"number", "title":"GALACTOSE", "cv_term": { "label":"galactose", "path":"http://purl.obolibrary.org/obo/CHEBI_28260" }, "constraints": { "required":false }},{"name":"GLUCOSE", "type":"number", "title":"GLUCOSE", "cv_term": { "label":"glucose", "path":"http://purl.obolibrary.org/obo/CHEBI_17234" }, "constraints": { "required":false }},{"name":"OsesN", "type":"number", "title":"OsesN", "cv_term": { "label":"carbohydrate", "path":"http://purl.obolibrary.org/obo/CHEBI_16646" }, "constraints": { "required":false }},{"name":"PoidsAU", "type":"number", "title":"AU weight", "cv_term": { "label":"Weight", "path":"http://aims.fao.org/aos/agrovoc/c_8349" }, "constraints": { "required":false }},{"name":"PoidsTotal", "type":"number", "title":"Total weight", "cv_term": { "label":"Weight", "path":"http://aims.fao.org/aos/agrovoc/c_8349" }, "constraints": { "required":false }},{"name":"PP", "type":"number", "title":"Wall weight", "cv_term": { "label":"Weight", "path":"http://aims.fao.org/aos/agrovoc/c_8349" }, "constraints": { "required":false }}],"primaryKey": [ "AliquotID" ], "categories": [{"name":"identifier","fields":["AliquotID"]},{"name":"quantitative","fields":["MassBefore","MassMIA","RDT","Starch1","Starch2","RHAMNOSE","ARABINOSE","XYLOSE","MANNOSE","GALACTOSE","GLUCOSE","OsesN","PoidsAU","PoidsTotal","PP"]}]},"dialect": {"caseSensitiveHeader": true, "delimiter":"\t", "decimalChar":".", "lineTerminator":"\n", "header":true, "doubleQuote": false, "skipInitialSpace": true, "commentChar":"#" },"encoding":"utf-8", "format":"csv", "mediatype":"text/tab-separated-values", "missingValues":[""]},{"path":"https://pmb-bordeaux.fr/getdata/tsv/frim1/cellwall_metaboFW", "profile": "https://inrae.github.io/ODAM/json-schema/odam-data-resource.json", "name":"cellwall_metaboFW", "title":"Cell Wall Compound quantifications (FW)", "identifier":"AliquotID", "obtainedFrom":"aliquots", "joinkey":"AliquotID", "cv_term": { "label":"chemical entity", "path":"http://purl.obolibrary.org/obo/CHEBI_24431" }, "schema": {"fields": [{"name":"AliquotID", "type":"number", "title":"Aliquot Identifier", "cv_term": { "label":"identifier", "path":"http://edamontology.org/data_0842" }, "constraints": { "required":true }},{"name":"RhamnoseFW", "type":"number", "title":"RhamnoseFW", "cv_term": { "label":"rhamnose", "path":"http://purl.obolibrary.org/obo/CHEBI_26546" }, "constraints": { "required":false }},{"name":"ArabinoseFW", "type":"number", "title":"ArabinoseFW", "cv_term": { "label":"arabinose", "path":"http://purl.obolibrary.org/obo/CHEBI_22599" }, "constraints": { "required":false }},{"name":"XyloseFW", "type":"number", "title":"XyloseFW", "cv_term": { "label":"xylose", "path":"http://purl.obolibrary.org/obo/CHEBI_18222" }, "constraints": { "required":false }},{"name":"MannoseFW", "type":"number", "title":"MannoseFW", "cv_term": { "label":"mannose", "path":"http://purl.obolibrary.org/obo/CHEBI_37684" }, "constraints": { "required":false }},{"name":"GalactoseFW", "type":"number", "title":"GalactoseFW", "cv_term": { "label":"galactose", "path":"http://purl.obolibrary.org/obo/CHEBI_28260" }, "constraints": { "required":false }},{"name":"GlucoseFW", "type":"number", "title":"GlucoseFW", "cv_term": { "label":"glucose", "path":"http://purl.obolibrary.org/obo/CHEBI_17234" }, "constraints": { "required":false }},{"name":"OsesAcidsFW", "type":"number", "title":"OsesAcidsFW", "constraints": { "required":false }},{"name":"TotFW", "type":"number", "title":"Total Fresh weight", "cv_term": { "label":"Weight", "path":"http://aims.fao.org/aos/agrovoc/c_8349" }, "constraints": { "required":false }}],"primaryKey": [ "AliquotID" ], "categories": [{"name":"identifier","fields":["AliquotID"]},{"name":"quantitative","fields":["RhamnoseFW","ArabinoseFW","XyloseFW","MannoseFW","GalactoseFW","GlucoseFW","OsesAcidsFW","TotFW"]}]},"dialect": {"caseSensitiveHeader": true, "delimiter":"\t", "decimalChar":".", "lineTerminator":"\n", "header":true, "doubleQuote": false, "skipInitialSpace": true, "commentChar":"#" },"encoding":"utf-8", "format":"csv", "mediatype":"text/tab-separated-values", "missingValues":[""]},{"path":"https://pmb-bordeaux.fr/getdata/tsv/frim1/activome", "profile": "https://inrae.github.io/ODAM/json-schema/odam-data-resource.json", "name":"activome", "title":"Activome Features", "identifier":"AliquotID", "obtainedFrom":"aliquots", "joinkey":"AliquotID", "cv_term": { "label":"chemical entity", "path":"http://purl.obolibrary.org/obo/CHEBI_24431" }, "schema": {"fields": [{"name":"AliquotID", "type":"number", "title":"Aliquot Identifier", "cv_term": { "label":"identifier", "path":"http://edamontology.org/data_0842" }, "constraints": { "required":true }},{"name":"PGM", "type":"number", "title":"Phosphoglucomutase", "unit":"nmol/gFW/min", "cv_term": { "label":"EC 5.4.2.2 Phosphoglucomutase", "path":"http://purl.obolibrary.org/obo/GO_0004614" }, "constraints": { "required":false }},{"name":"cFBPase", "type":"number", "title":"cytosolic Fru-1,6-bisphosphatase", "unit":"nmol/gFW/min", "cv_term": { "label":"EC 3.1.3.11 fructose-bisphosphatase", "path":"http://purl.obolibrary.org/obo/GO_0042132" }, "constraints": { "required":false }},{"name":"PyrK", "type":"number", "title":"Pyruvate Kinase", "unit":"nmol/gFW/min", "cv_term": { "label":"EC 2.7.1.40 pyruvate kinase", "path":"http://purl.obolibrary.org/obo/GO_0004743" }, "constraints": { "required":false }},{"name":"CitS", "type":"number", "title":"Citrate Synthase Total", "unit":"nmol/gFW/min", "cv_term": { "label":"EC 2.3.3.1 citrate synthase", "path":"http://purl.obolibrary.org/obo/GO_0036440" }, "constraints": { "required":false }},{"name":"PFP", "type":"number", "title":"6-phosphofructokinase", "unit":"nmol/gFW/min", "cv_term": { "label":"EC 2.7.1.90 6-phosphofructokinase", "path":"http://purl.obolibrary.org/obo/GO_0047334" }, "constraints": { "required":false }},{"name":"Aconitase", "type":"number", "title":"Aconitase", "unit":"nmol/gFW/min", "cv_term": { "label":"EC 4.2.1.3 Aconitase", "path":"http://purl.obolibrary.org/obo/GO_000394" }, "constraints": { "required":false }},{"name":"PFK", "type":"number", "title":"ATP-Phosphofructokinase", "unit":"nmol/gFW/min", "cv_term": { "label":"EC 2.7.1.11 phosphofructokinase", "path":"http://purl.obolibrary.org/obo/GO_0008443" }, "constraints": { "required":false }},{"name":"FruK", "type":"number", "title":"Fructokinase", "unit":"nmol/gFW/min", "cv_term": { "label":"EC 2.7.1.4 fructokinase", "path":"http://purl.obolibrary.org/obo/GO_0008865" }, "constraints": { "required":false }},{"name":"pFBPase", "type":"number", "title":"plastidial Fru-1,6-bisphosphatase", "unit":"nmol/gFW/min", "cv_term": { "label":"EC 3.1.3.11 fructose-bisphosphatase", "path":"http://purl.obolibrary.org/obo/GO_0042132" }, "constraints": { "required":false }},{"name":"GluK", "type":"number", "title":"Glucokinase", "unit":"nmol/gFW/min", "cv_term": { "label":"EC 2.7.1.2 Glucokinase", "path":"http://purl.obolibrary.org/obo/GO_0004340" }, "constraints": { "required":false }},{"name":"NAD_ISODH", "type":"number", "title":"Isocitrate DH - NADP", "unit":"nmol/gFW/min", "cv_term": { "label":"EC 1.1.1.42 isocitrate dehydrogenase", "path":"http://purl.obolibrary.org/obo/GO_0004450" }, "constraints": { "required":false }},{"name":"Enolase", "type":"number", "title":"Enolase", "unit":"nmol/gFW/min", "cv_term": { "label":"EC 4.2.1.11 Enolase", "path":"http://purl.obolibrary.org/obo/GO_0000015" }, "constraints": { "required":false }},{"name":"NADP_ISODH", "type":"number", "title":"Isocitrate DH - NAD", "unit":"nmol/gFW/min", "cv_term": { "label":"EC 1.1.1.41 isocitrate dehydrogenase", "path":"http://purl.obolibrary.org/obo/GO_0004448" }, "constraints": { "required":false }},{"name":"PEPC", "type":"number", "title":"PEP Carboxylase", "unit":"nmol/gFW/min", "cv_term": { "label":"EC 4.1.1.31 PEP Carboxylase", "path":"http://purl.obolibrary.org/obo/GO_0008964" }, "constraints": { "required":false }},{"name":"Aldolase", "type":"number", "title":"FBP-Aldolase", "unit":"nmol/gFW/min", "cv_term": { "label":"EC 4.1.2.13 fructose-bisphosphate aldolase", "path":"http://purl.obolibrary.org/obo/GO_0004332" }, "constraints": { "required":false }},{"name":"Succ_CoA_ligase", "type":"number", "title":"Succinate CoA ligase", "unit":"nmol/gFW/min", "cv_term": { "label":"EC 6.2.1.5 Succinate CoA ligase", "path":"http://purl.obolibrary.org/obo/GO_0042709" }, "constraints": { "required":false }},{"name":"NAD_MalDH", "type":"number", "title":"Malate DH - NAD", "unit":"nmol/gFW/min", "cv_term": { "label":"EC 1.1.1.37 malate dehydrogenase", "path":"http://purl.obolibrary.org/obo/GO_0016615" }, "constraints": { "required":false }},{"name":"AlaAT", "type":"number", "title":"Alanine aminotransferase", "unit":"nmol/gFW/min", "cv_term": { "label":"EC 2.6.1.2 alanine transaminase", "path":"http://purl.obolibrary.org/obo/GO_0004021" }, "constraints": { "required":false }},{"name":"Fumarase", "type":"number", "title":"Fumarase", "unit":"nmol/gFW/min", "cv_term": { "label":"EC 4.2.1.2 fumarase", "path":"http://purl.obolibrary.org/obo/GO_0004333" }, "constraints": { "required":false }},{"name":"AspAT", "type":"number", "title":"Aspartate aminotransferase", "unit":"nmol/gFW/min", "cv_term": { "label":"EC 2.6.1.1 aspartate aminotransferase", "path":"http://purl.obolibrary.org/obo/GO_0004069" }, "constraints": { "required":false }},{"name":"NADP_GluDH", "type":"number", "title":"Glutamate DH - NADP", "unit":"nmol/gFW/min", "cv_term": { "label":"EC 1.4.1.4 glutamate dehydrogenase NADP", "path":"http://purl.obolibrary.org/obo/GO_0004354" }, "constraints": { "required":false }},{"name":"NAD_GAPDH", "type":"number", "title":"GAPDH - NAD", "unit":"nmol/gFW/min", "cv_term": { "label":"EC 1.2.1.12 glyceraldehyde-3-phosphate dehydrogenase NAD", "path":"http://purl.obolibrary.org/obo/GO_0004365" }, "constraints": { "required":false }},{"name":"NADP_GAPDH", "type":"number", "title":"GAPDH - NADP", "unit":"nmol/gFW/min", "cv_term": { "label":"EC 1.2.1.13 glyceraldehyde-3-phosphate dehydrogenase NADP", "path":"http://purl.obolibrary.org/obo/GO_0047100" }, "constraints": { "required":false }},{"name":"NAD_GluDH", "type":"number", "title":"Glutamate DH - NAD", "unit":"nmol/gFW/min", "cv_term": { "label":"EC 1.4.1.2 glutamate dehydrogenase NAP", "path":"http://purl.obolibrary.org/obo/GO_0004352" }, "constraints": { "required":false }},{"name":"TPI", "type":"number", "title":"Triose Phosphate Isomerase", "unit":"nmol/gFW/min", "cv_term": { "label":"EC 5.3.1.1 triose-phosphate isomerase", "path":"http://purl.obolibrary.org/obo/GO_0004807" }, "constraints": { "required":false }},{"name":"PGK", "type":"number", "title":"Phosphoglycerokinase", "unit":"nmol/gFW/min", "cv_term": { "label":"EC 2.7.2.3 phosphoglycerate kinase", "path":"http://purl.obolibrary.org/obo/GO_0004618" }, "constraints": { "required":false }},{"name":"Neutral_Inv", "type":"number", "title":"Neutral invertase", "unit":"nmol/gFW/min", "cv_term": { "label":"EC 3.2.1.26 invertase", "path":"http://purl.obolibrary.org/obo/GO_0004564" }, "constraints": { "required":false }},{"name":"Acid_Inv", "type":"number", "title":"Acid invertase", "unit":"nmol/gFW/min", "cv_term": { "label":"EC 3.2.1.26 invertase", "path":"http://purl.obolibrary.org/obo/GO_0004564" }, "constraints": { "required":false }},{"name":"G6PDH", "type":"number", "title":"Glucose-6-Phosphate Dehydrogenase", "unit":"nmol/gFW/min", "cv_term": { "label":"EC 1.1.1.49 glucose-6-phosphate dehydrogenase", "path":"http://purl.obolibrary.org/obo/GO_0004345" }, "constraints": { "required":false }},{"name":"UGPase", "type":"number", "title":"UDP-Glucose Pyrophosphorylase", "unit":"nmol/gFW/min", "cv_term": { "label":"EC 2.7.7.9 UDPG phosphorylase", "path":"http://purl.obolibrary.org/obo/GO_0003983" }, "constraints": { "required":false }},{"name":"SuSy", "type":"number", "title":"Sucrose Synthase", "unit":"nmol/gFW/min", "cv_term": { "label":"EC 2.4.1.13 sucrose synthase", "path":"http://purl.obolibrary.org/obo/GO_0016157" }, "constraints": { "required":false }},{"name":"NAD_ME", "type":"number", "title":"Malic Enzyme NAD", "unit":"nmol/gFW/min", "cv_term": { "label":"EC 1.1.1.38 NAD+-malic enzyme", "path":"http://purl.obolibrary.org/obo/GO_0009763" }, "constraints": { "required":false }},{"name":"ShiDH", "type":"number", "title":"Shikimate dehydrogenase", "unit":"nmol/gFW/min", "cv_term": { "label":"EC 1.1.1.282 shikimate dehydrogenase", "path":"http://purl.obolibrary.org/obo/GO_0033706" }, "constraints": { "required":false }},{"name":"NADP_ME", "type":"number", "title":"Malic Enzyme NADP", "unit":"nmol/gFW/min", "cv_term": { "label":"EC 1.1.1.40 NADP+-malic enzyme", "path":"http://purl.obolibrary.org/obo/GO_0009762" }, "constraints": { "required":false }},{"name":"PGI", "type":"number", "title":"Phosphoglucose Isomerase", "unit":"nmol/gFW/min", "cv_term": { "label":"EC 5.3.1.9 phosphohexose isomerase", "path":"http://purl.obolibrary.org/obo/GO_0004347" }, "constraints": { "required":false }},{"name":"StarchS", "type":"number", "title":"Soluble Starch Synthase", "unit":"nmol/gFW/min", "cv_term": { "label":"EC 2.4.1.21 starch synthase", "path":"http://purl.obolibrary.org/obo/GO_0009011" }, "constraints": { "required":false }},{"name":"AGPase", "type":"number", "title":"AGPase", "unit":"nmol/gFW/min", "cv_term": { "label":"EC 2.7.7.27 ADP-glucose synthase", "path":"http://purl.obolibrary.org/obo/GO_0080042" }, "constraints": { "required":false }},{"name":"SPS", "type":"number", "title":"Sucrose Phosphate Synthase", "unit":"nmol/gFW/min", "cv_term": { "label":"EC 2.4.1.14 sucrose-phosphate synthase", "path":"http://purl.obolibrary.org/obo/GO_0046524" }, "constraints": { "required":false }}],"primaryKey": [ "AliquotID" ], "categories": [{"name":"identifier","fields":["AliquotID"]},{"name":"quantitative","fields":["PGM","cFBPase","PyrK","CitS","PFP","Aconitase","PFK","FruK","pFBPase","GluK","NAD_ISODH","Enolase","NADP_ISODH","PEPC","Aldolase","Succ_CoA_ligase","NAD_MalDH","AlaAT","Fumarase","AspAT","NADP_GluDH","NAD_GAPDH","NADP_GAPDH","NAD_GluDH","TPI","PGK","Neutral_Inv","Acid_Inv","G6PDH","UGPase","SuSy","NAD_ME","ShiDH","NADP_ME","PGI","StarchS","AGPase","SPS"]}]},"dialect": {"caseSensitiveHeader": true, "delimiter":"\t", "decimalChar":".", "lineTerminator":"\n", "header":true, "doubleQuote": false, "skipInitialSpace": true, "commentChar":"#" },"encoding":"utf-8", "format":"csv", "mediatype":"text/tab-separated-values", "missingValues":[""]},{"path":"https://pmb-bordeaux.fr/getdata/tsv/frim1/pools", "profile": "https://inrae.github.io/ODAM/json-schema/odam-data-resource.json", "name":"pools", "title":"Pools of remaining pools", "identifier":"PoolID", "obtainedFrom":"samples", "joinkey":"SampleID", "cv_term": { "label":"organ harvesting", "path":"http://purl.obolibrary.org/obo/OBI_1110046" }, "schema": {"fields": [{"name":"SampleID", "type":"number", "title":"Pool of several harvests", "cv_term": { "label":"identifier", "path":"http://edamontology.org/data_0842" }, "constraints": { "required":true }},{"name":"PoolID", "type":"string", "title":"Pool of several samples", "cv_term": { "label":"identifier", "path":"http://edamontology.org/data_0842" }, "constraints": { "required":true }}],"primaryKey": [ "PoolID" ], "foreignKeys": [ { "fields": "PoolID", "reference": {"resource": "qMS_metabo", "fields": "PoolID"} },{ "fields": "PoolID", "reference": {"resource": "qNMR_metabo", "fields": "PoolID"} }],"categories": [{"name":"identifier","fields":["PoolID"]}]},"dialect": {"caseSensitiveHeader": true, "delimiter":"\t", "decimalChar":".", "lineTerminator":"\n", "header":true, "doubleQuote": false, "skipInitialSpace": true, "commentChar":"#" },"encoding":"utf-8", "format":"csv", "mediatype":"text/tab-separated-values", "missingValues":[""]},{"path":"https://pmb-bordeaux.fr/getdata/tsv/frim1/qMS_metabo", "profile": "https://inrae.github.io/ODAM/json-schema/odam-data-resource.json", "name":"qMS_metabo", "title":"MS Compounds quantification", "identifier":"PoolID", "obtainedFrom":"pools", "joinkey":"PoolID", "cv_term": { "label":"chemical entity", "path":"http://purl.obolibrary.org/obo/CHEBI_24431" }, "schema": {"fields": [{"name":"PoolID", "type":"string", "title":"Pool of several samples", "cv_term": { "label":"identifier", "path":"http://edamontology.org/data_0842" }, "constraints": { "required":true }},{"name":"Mass", "type":"number", "title":"Mass", "unit":"mg", "cv_term": { "label":"Weight", "path":"http://aims.fao.org/aos/agrovoc/c_8349" }, "constraints": { "required":false }},{"name":"glutamate", "type":"number", "title":"glutamate w/IS", "unit":"pmol/mgFW", "cv_term": { "label":"glutamic acid", "path":"http://purl.obolibrary.org/obo/CHEBI_16015" }, "constraints": { "required":false }},{"name":"aspartate", "type":"number", "title":"aspartate w/IS", "unit":"pmol/mgFW", "cv_term": { "label":"aspartate", "path":"http://purl.obolibrary.org/obo/CHEBI_132943" }, "constraints": { "required":false }},{"name":"glycerate", "type":"number", "title":"glycerate w/IS", "unit":"pmol/mgFW", "cv_term": { "label":"glycerate", "path":"http://purl.obolibrary.org/obo/CHEBI_33871" }, "constraints": { "required":false }},{"name":"G6P", "type":"number", "title":"G6P w/IS", "unit":"pmol/mgFW", "cv_term": { "label":"Glucose-6-phosphate", "path":"http://purl.obolibrary.org/obo/CHEBI_4170" }, "constraints": { "required":false }},{"name":"F6P", "type":"number", "title":"F6P w/IS", "unit":"pmol/mgFW", "cv_term": { "label":"Fructose-6-phosphate", "path":"http://purl.obolibrary.org/obo/CHEBI_15946" }, "constraints": { "required":false }},{"name":"succinate", "type":"number", "title":"succinate w/IS", "unit":"pmol/mgFW", "cv_term": { "label":"succinate", "path":"http://purl.obolibrary.org/obo/CHEBI_26806" }, "constraints": { "required":false }},{"name":"malate", "type":"number", "title":"malate w/IS", "unit":"pmol/mgFW", "cv_term": { "label":"malic acid", "path":"http://purl.obolibrary.org/obo/CHEBI_30796" }, "constraints": { "required":false }},{"name":"OG", "type":"number", "title":"2OG w/IS", "unit":"pmol/mgFW", "cv_term": { "label":"2-Oxoglutarate", "path":"http://purl.obolibrary.org/obo/CHEBI_30916" }, "constraints": { "required":false }},{"name":"UDPG", "type":"number", "title":"UDPG w/IS", "unit":"pmol/mgFW", "cv_term": { "label":"Uridine diphosphate glucose", "path":"http://purl.obolibrary.org/obo/CHEBI_18066" }, "constraints": { "required":false }},{"name":"R5P", "type":"number", "title":"R5P w/IS", "unit":"pmol/mgFW", "cv_term": { "label":"Ribose-5-phosphate", "path":"http://purl.obolibrary.org/obo/CHEBI_17797" }, "constraints": { "required":false }},{"name":"G1P", "type":"number", "title":"G1P w/IS", "unit":"pmol/mgFW", "cv_term": { "label":"Glucose-1-phosphate", "path":"http://purl.obolibrary.org/obo/CHEBI_29042" }, "constraints": { "required":false }},{"name":"Ru5PandX5P", "type":"number", "title":"Ru5PandX5P w/IS", "unit":"pmol/mgFW", "constraints": { "required":false }},{"name":"DHAP", "type":"number", "title":"DHAP w/IS", "unit":"pmol/mgFW", "cv_term": { "label":"Dihydroxyacetone phosphate", "path":"http://purl.obolibrary.org/obo/CHEBI_16108" }, "constraints": { "required":false }},{"name":"AMP", "type":"number", "title":"AMP w/IS", "unit":"pmol/mgFW", "cv_term": { "label":"Adenosine monophosphate", "path":"http://purl.obolibrary.org/obo/CHEBI_16027" }, "constraints": { "required":false }},{"name":"FBP", "type":"number", "title":"FBP w/IS", "unit":"pmol/mgFW", "cv_term": { "label":"fructose-1-6-bisphosphate", "path":"http://purl.obolibrary.org/obo/CHEBI_78682" }, "constraints": { "required":false }},{"name":"shikimate", "type":"number", "title":"shikimate", "unit":"pmol/mgFW", "cv_term": { "label":"shikimate", "path":"http://purl.obolibrary.org/obo/CHEBI_36208" }, "constraints": { "required":false }},{"name":"RuBP", "type":"number", "title":"RuBP", "unit":"pmol/mgFW", "cv_term": { "label":"Ribulose-1,5-bisphosphate", "path":"http://purl.obolibrary.org/obo/CHEBI_16710" }, "constraints": { "required":false }},{"name":"S7P", "type":"number", "title":"S7P", "unit":"pmol/mgFW", "cv_term": { "label":"sedoheptulose 7-phosphate", "path":"http://purl.obolibrary.org/obo/CHEBI_15721" }, "constraints": { "required":false }},{"name":"NAD", "type":"number", "title":"NAD", "unit":"pmol/mgFW", "cv_term": { "label":"NAD", "path":"http://purl.obolibrary.org/obo/CHEBI_13389" }, "constraints": { "required":false }},{"name":"SBP", "type":"number", "title":"SBP", "unit":"pmol/mgFW", "cv_term": { "label":"Sedoheptulose-1,7-bisphosphate", "path":"http://purl.obolibrary.org/obo/CHEBI_17969" }, "constraints": { "required":false }},{"name":"aconitate", "type":"number", "title":"aconitate", "unit":"pmol/mgFW", "cv_term": { "label":"aconitic acid", "path":"http://purl.obolibrary.org/obo/CHEBI_22211" }, "constraints": { "required":false }},{"name":"ADPG", "type":"number", "title":"ADPG", "unit":"pmol/mgFW", "cv_term": { "label":"ADP-glucose", "path":"http://purl.obolibrary.org/obo/CHEBI_35239" }, "constraints": { "required":false }},{"name":"NADP", "type":"number", "title":"NADP", "unit":"pmol/mgFW", "cv_term": { "label":"NADP", "path":"http://purl.obolibrary.org/obo/CHEBI_18009" }, "constraints": { "required":false }},{"name":"ADP", "type":"number", "title":"ADP", "unit":"pmol/mgFW", "cv_term": { "label":"Adenosine diphosphate", "path":"http://purl.obolibrary.org/obo/CHEBI_16761" }, "constraints": { "required":false }}],"primaryKey": [ "PoolID" ], "categories": [{"name":"identifier","fields":["PoolID"]},{"name":"quantitative","fields":["Mass","glutamate","aspartate","glycerate","G6P","F6P","succinate","malate","OG","UDPG","R5P","G1P","Ru5PandX5P","DHAP","AMP","FBP","shikimate","RuBP","S7P","NAD","SBP","aconitate","ADPG","NADP","ADP"]}]},"dialect": {"caseSensitiveHeader": true, "delimiter":"\t", "decimalChar":".", "lineTerminator":"\n", "header":true, "doubleQuote": false, "skipInitialSpace": true, "commentChar":"#" },"encoding":"utf-8", "format":"csv", "mediatype":"text/tab-separated-values", "missingValues":[""]},{"path":"https://pmb-bordeaux.fr/getdata/tsv/frim1/qNMR_metabo", "profile": "https://inrae.github.io/ODAM/json-schema/odam-data-resource.json", "name":"qNMR_metabo", "title":"NMR Compounds quantification", "identifier":"PoolID", "obtainedFrom":"pools", "joinkey":"PoolID", "cv_term": { "label":"chemical entity", "path":"http://purl.obolibrary.org/obo/CHEBI_24431" }, "schema": {"fields": [{"name":"PoolID", "type":"string", "title":"Pool of several samples", "cv_term": { "label":"identifier", "path":"http://edamontology.org/data_0842" }, "constraints": { "required":true }},{"name":"glucose", "type":"number", "title":"glucose", "unit":"nMol / mg MS", "cv_term": { "label":"glucose", "path":"http://purl.obolibrary.org/obo/CHEBI_17234" }, "constraints": { "required":false }},{"name":"saccharose", "type":"number", "title":"saccharose", "unit":"nMol / mg MS", "cv_term": { "label":"sucrose", "path":"http://purl.obolibrary.org/obo/CHEBI_17992" }, "constraints": { "required":false }},{"name":"fructose", "type":"number", "title":"fructose", "unit":"nMol / mg MS", "cv_term": { "label":"fructose", "path":"http://purl.obolibrary.org/obo/CHEBI_28757" }, "constraints": { "required":false }},{"name":"galactose", "type":"number", "title":"galactose", "unit":"nMol / mg MS", "cv_term": { "label":"galactose", "path":"http://purl.obolibrary.org/obo/CHEBI_28260" }, "constraints": { "required":false }},{"name":"mannose", "type":"number", "title":"mannose", "unit":"nMol / mg MS", "cv_term": { "label":"mannose", "path":"http://purl.obolibrary.org/obo/CHEBI_37684" }, "constraints": { "required":false }},{"name":"rhamnose", "type":"number", "title":"rhamnose", "unit":"nMol / mg MS", "cv_term": { "label":"rhamnose", "path":"http://purl.obolibrary.org/obo/CHEBI_26546" }, "constraints": { "required":false }},{"name":"acetate", "type":"number", "title":"acetate", "unit":"nMol / mg MS", "cv_term": { "label":"acetate", "path":"http://purl.obolibrary.org/obo/CHEBI_30089" }, "constraints": { "required":false }},{"name":"chlorogenate", "type":"number", "title":"chlorogenate", "unit":"nMol / mg MS", "cv_term": { "label":"chlorogenate", "path":"http://purl.obolibrary.org/obo/CHEBI_57644" }, "constraints": { "required":false }},{"name":"citrate", "type":"number", "title":"citrate", "unit":"nMol / mg MS", "cv_term": { "label":"citric acid", "path":"http://purl.obolibrary.org/obo/CHEBI_30769" }, "constraints": { "required":false }},{"name":"fumarate", "type":"number", "title":"fumarate", "unit":"nMol / mg MS", "cv_term": { "label":"fumaric acid", "path":"http://purl.obolibrary.org/obo/CHEBI_18012" }, "constraints": { "required":false }},{"name":"galacturonate", "type":"number", "title":"galacturonate", "unit":"nMol / mg MS", "cv_term": { "label":"galacturonate", "path":"http://purl.obolibrary.org/obo/CHEBI_24175" }, "constraints": { "required":false }},{"name":"malate", "type":"number", "title":"malate", "unit":"nMol / mg MS", "cv_term": { "label":"malic acid", "path":"http://purl.obolibrary.org/obo/CHEBI_30796" }, "constraints": { "required":false }},{"name":"quinate", "type":"number", "title":"quinate", "unit":"nMol / mg MS", "cv_term": { "label":"quinate", "path":"http://purl.obolibrary.org/obo/CHEBI_26490" }, "constraints": { "required":false }},{"name":"alanine", "type":"number", "title":"alanine", "unit":"nMol / mg MS", "cv_term": { "label":"alanine", "path":"http://purl.obolibrary.org/obo/CHEBI_16449" }, "constraints": { "required":false }},{"name":"asparagine", "type":"number", "title":"asparagine", "unit":"nMol / mg MS", "cv_term": { "label":"asparagine", "path":"http://purl.obolibrary.org/obo/CHEBI_22653" }, "constraints": { "required":false }},{"name":"aspartate", "type":"number", "title":"aspartate", "unit":"nMol / mg MS", "cv_term": { "label":"aspartate", "path":"http://purl.obolibrary.org/obo/CHEBI_132943" }, "constraints": { "required":false }},{"name":"GABA", "type":"number", "title":"GABA", "unit":"nMol / mg MS", "cv_term": { "label":"4-aminobutyric acid", "path":"http://purl.obolibrary.org/obo/CHEBI_16865" }, "constraints": { "required":false }},{"name":"glutamine", "type":"number", "title":"glutamine", "unit":"nMol / mg MS", "cv_term": { "label":"glutamine", "path":"http://purl.obolibrary.org/obo/CHEBI_18050" }, "constraints": { "required":false }},{"name":"glutamate", "type":"number", "title":"glutamate", "unit":"nMol / mg MS", "cv_term": { "label":"glutamic acid", "path":"http://purl.obolibrary.org/obo/CHEBI_16015" }, "constraints": { "required":false }},{"name":"isoleucine", "type":"number", "title":"isoleucine", "unit":"nMol / mg MS", "cv_term": { "label":"isoleucine", "path":"http://purl.obolibrary.org/obo/CHEBI_17191" }, "constraints": { "required":false }},{"name":"phenylalanine", "type":"number", "title":"phenylalanine", "unit":"nMol / mg MS", "cv_term": { "label":"phenylalanine", "path":"http://purl.obolibrary.org/obo/CHEBI_17295" }, "constraints": { "required":false }},{"name":"tryptophane", "type":"number", "title":"tryptophane", "unit":"nMol / mg MS", "cv_term": { "label":"tryptophan", "path":"http://purl.obolibrary.org/obo/CHEBI_16828" }, "constraints": { "required":false }},{"name":"tyrosine", "type":"number", "title":"tyrosine", "unit":"nMol / mg MS", "cv_term": { "label":"tyrosine", "path":"http://purl.obolibrary.org/obo/CHEBI_17895" }, "constraints": { "required":false }},{"name":"valine", "type":"number", "title":"valine", "unit":"nMol / mg MS", "cv_term": { "label":"valine", "path":"http://purl.obolibrary.org/obo/CHEBI_16414" }, "constraints": { "required":false }},{"name":"pyroglutamate", "type":"number", "title":"pyroglutamate", "unit":"nMol / mg MS", "cv_term": { "label":"pyroglutamate", "path":"http://purl.obolibrary.org/obo/CHEBI_16010" }, "constraints": { "required":false }},{"name":"trigonelline", "type":"number", "title":"trigonelline", "unit":"nMol / mg MS", "cv_term": { "label":"trigonelline", "path":"http://purl.obolibrary.org/obo/CHEBI_18183" }, "constraints": { "required":false }},{"name":"choline", "type":"number", "title":"choline", "unit":"nMol / mg MS", "cv_term": { "label":"choline", "path":"http://purl.obolibrary.org/obo/CHEBI_15354" }, "constraints": { "required":false }},{"name":"inositol", "type":"number", "title":"inositol", "unit":"nMol / mg MS", "cv_term": { "label":"inositol", "path":"http://purl.obolibrary.org/obo/CHEBI_17628" }, "constraints": { "required":false }}],"primaryKey": [ "PoolID" ], "categories": [{"name":"identifier","fields":["PoolID"]},{"name":"quantitative","fields":["glucose","saccharose","fructose","galactose","mannose","rhamnose","acetate","chlorogenate","citrate","fumarate","galacturonate","malate","quinate","alanine","asparagine","aspartate","GABA","glutamine","glutamate","isoleucine","phenylalanine","tryptophane","tyrosine","valine","pyroglutamate","trigonelline","choline","inositol"]}]},"dialect": {"caseSensitiveHeader": true, "delimiter":"\t", "decimalChar":".", "lineTerminator":"\n", "header":true, "doubleQuote": false, "skipInitialSpace": true, "commentChar":"#" },"encoding":"utf-8", "format":"csv", "mediatype":"text/tab-separated-values", "missingValues":[""]},{"path":"https://pmb-bordeaux.fr/getdata/tsv/frim1/plato_hexosesP", "profile": "https://inrae.github.io/ODAM/json-schema/odam-data-resource.json", "name":"plato_hexosesP", "title":"Hexoses Phosphate", "identifier":"AliquotID", "obtainedFrom":"aliquots", "joinkey":"AliquotID", "cv_term": { "label":"chemical entity", "path":"http://purl.obolibrary.org/obo/CHEBI_24431" }, "schema": {"fields": [{"name":"AliquotID", "type":"number", "title":"Aliquot Identifier", "cv_term": { "label":"identifier", "path":"http://edamontology.org/data_0842" }, "constraints": { "required":true }},{"name":"F6P", "type":"number", "title":"Fructose-6-phosphate", "cv_term": { "label":"Fructose-6-phosphate", "path":"http://purl.obolibrary.org/obo/CHEBI_15946" }, "constraints": { "required":false }},{"name":"G6P", "type":"number", "title":"Glucose-6-phosphate", "cv_term": { "label":"Glucose-6-phosphate", "path":"http://purl.obolibrary.org/obo/CHEBI_4170" }, "constraints": { "required":false }},{"name":"G1P", "type":"number", "title":"Glucose-1-phosphate", "cv_term": { "label":"Glucose-1-phosphate", "path":"http://purl.obolibrary.org/obo/CHEBI_29042" }, "constraints": { "required":false }}],"primaryKey": [ "AliquotID" ], "categories": [{"name":"identifier","fields":["AliquotID"]},{"name":"quantitative","fields":["F6P","G6P","G1P"]}]},"dialect": {"caseSensitiveHeader": true, "delimiter":"\t", "decimalChar":".", "lineTerminator":"\n", "header":true, "doubleQuote": false, "skipInitialSpace": true, "commentChar":"#" },"encoding":"utf-8", "format":"csv", "mediatype":"text/tab-separated-values", "missingValues":[""]},{"path":"https://pmb-bordeaux.fr/getdata/tsv/frim1/lipids_AG", "profile": "https://inrae.github.io/ODAM/json-schema/odam-data-resource.json", "name":"lipids_AG", "title":"Lipids AG", "identifier":"AliquotID", "obtainedFrom":"aliquots", "joinkey":"AliquotID", "cv_term": { "label":"chemical entity", "path":"http://purl.obolibrary.org/obo/CHEBI_24431" }, "schema": {"fields": [{"name":"AliquotID", "type":"number", "title":"Aliquot Identifier", "cv_term": { "label":"identifier", "path":"http://edamontology.org/data_0842" }, "constraints": { "required":true }},{"name":"DW", "type":"number", "title":"DW", "unit":"mg", "cv_term": { "label":"Weight", "path":"http://aims.fao.org/aos/agrovoc/c_8349" }, "constraints": { "required":false }},{"name":"M_AG", "type":"number", "title":"M_AG", "unit":"mg", "cv_term": { "label":"Weight", "path":"http://aims.fao.org/aos/agrovoc/c_8349" }, "constraints": { "required":false }},{"name":"AG", "type":"number", "title":"AG", "constraints": { "required":false }},{"name":"C16_0", "type":"number", "title":"palmitique", "unit":"mg/g", "cv_term": { "label":"methyl palmitate", "path":"http://purl.obolibrary.org/obo/CHEBI_69187" }, "constraints": { "required":false }},{"name":"C18_2", "type":"number", "title":"linoleique", "unit":"mg/g", "cv_term": { "label":"methyl linoleate", "path":"http://purl.obolibrary.org/obo/CHEBI_69080" }, "constraints": { "required":false }},{"name":"C18_3", "type":"number", "title":"linolenique", "unit":"mg/g", "cv_term": { "label":"methyl linolenate", "path":"http://purl.obolibrary.org/obo/CHEBI_133634" }, "constraints": { "required":false }},{"name":"C18_0", "type":"number", "title":"stearique", "unit":"mg/g", "cv_term": { "label":"methyl stearate", "path":"http://purl.obolibrary.org/obo/CHEBI_69188" }, "constraints": { "required":false }}],"primaryKey": [ "AliquotID" ], "categories": [{"name":"identifier","fields":["AliquotID"]},{"name":"quantitative","fields":["DW","M_AG","AG","C16_0","C18_2","C18_3","C18_0"]}]},"dialect": {"caseSensitiveHeader": true, "delimiter":"\t", "decimalChar":".", "lineTerminator":"\n", "header":true, "doubleQuote": false, "skipInitialSpace": true, "commentChar":"#" },"encoding":"utf-8", "format":"csv", "mediatype":"text/tab-separated-values", "missingValues":[""]},{"path":"https://pmb-bordeaux.fr/getdata/tsv/frim1/AminoAcid", "profile": "https://inrae.github.io/ODAM/json-schema/odam-data-resource.json", "name":"AminoAcid", "title":"Amino Acids", "identifier":"AliquotID", "obtainedFrom":"aliquots", "joinkey":"AliquotID", "cv_term": { "label":"chemical entity", "path":"http://purl.obolibrary.org/obo/CHEBI_24431" }, "schema": {"fields": [{"name":"AliquotID", "type":"number", "title":"Aliquot Identifier", "cv_term": { "label":"identifier", "path":"http://edamontology.org/data_0842" }, "constraints": { "required":true }},{"name":"His", "type":"number", "title":"Histidine", "cv_term": { "label":"Histidine", "path":"http://purl.obolibrary.org/obo/CHEBI_17628" }, "constraints": { "required":false }},{"name":"Asn", "type":"number", "title":"Asparagine", "cv_term": { "label":"asparagine", "path":"http://purl.obolibrary.org/obo/CHEBI_22653" }, "constraints": { "required":false }},{"name":"Ser", "type":"number", "title":"Serine", "cv_term": { "label":"serine", "path":"http://purl.obolibrary.org/obo/CHEBI_17822" }, "constraints": { "required":false }},{"name":"Gln", "type":"number", "title":"Glutamine", "cv_term": { "label":"glutamine", "path":"http://purl.obolibrary.org/obo/CHEBI_18050" }, "constraints": { "required":false }},{"name":"Gly", "type":"number", "title":"Glycine", "cv_term": { "label":"glycine", "path":"http://purl.obolibrary.org/obo/CHEBI_15428" }, "constraints": { "required":false }},{"name":"Asp", "type":"number", "title":"Aspartate", "cv_term": { "label":"aspartate", "path":"http://purl.obolibrary.org/obo/CHEBI_132943" }, "constraints": { "required":false }},{"name":"Glu", "type":"number", "title":"Glutamate", "cv_term": { "label":"glutamic acid", "path":"http://purl.obolibrary.org/obo/CHEBI_16015" }, "constraints": { "required":false }},{"name":"Thr", "type":"number", "title":"Threonine", "cv_term": { "label":"threonine", "path":"http://purl.obolibrary.org/obo/CHEBI_26986" }, "constraints": { "required":false }},{"name":"Ala", "type":"number", "title":"Alanine", "cv_term": { "label":"alanine", "path":"http://purl.obolibrary.org/obo/CHEBI_16449" }, "constraints": { "required":false }},{"name":"Pro", "type":"number", "title":"Proline", "cv_term": { "label":"proline", "path":"http://purl.obolibrary.org/obo/CHEBI_26271" }, "constraints": { "required":false }},{"name":"Tyr", "type":"number", "title":"Tyrosine", "cv_term": { "label":"tyrosine", "path":"http://purl.obolibrary.org/obo/CHEBI_17895" }, "constraints": { "required":false }},{"name":"Lys", "type":"number", "title":"Lysine", "cv_term": { "label":"lysine", "path":"http://purl.obolibrary.org/obo/CHEBI_25094" }, "constraints": { "required":false }},{"name":"Val", "type":"number", "title":"Valine", "cv_term": { "label":"valine", "path":"http://purl.obolibrary.org/obo/CHEBI_16414" }, "constraints": { "required":false }},{"name":"Ile", "type":"number", "title":"Isoleucine", "cv_term": { "label":"isoleucine", "path":"http://purl.obolibrary.org/obo/CHEBI_17191" }, "constraints": { "required":false }},{"name":"Leu", "type":"number", "title":"Leucine", "cv_term": { "label":"leucine", "path":"http://purl.obolibrary.org/obo/CHEBI_25017" }, "constraints": { "required":false }},{"name":"Phe", "type":"number", "title":"Phenylalanine", "cv_term": { "label":"phenylalanine", "path":"http://purl.obolibrary.org/obo/CHEBI_17295" }, "constraints": { "required":false }}],"primaryKey": [ "AliquotID" ], "categories": [{"name":"identifier","fields":["AliquotID"]},{"name":"quantitative","fields":["His","Asn","Ser","Gln","Gly","Asp","Glu","Thr","Ala","Pro","Tyr","Lys","Val","Ile","Leu","Phe"]}]},"dialect": {"caseSensitiveHeader": true, "delimiter":"\t", "decimalChar":".", "lineTerminator":"\n", "header":true, "doubleQuote": false, "skipInitialSpace": true, "commentChar":"#" },"encoding":"utf-8", "format":"csv", "mediatype":"text/tab-separated-values", "missingValues":[""]}], "sources":[{"title":"ODAM Dataexplorer", "path":"https://pmb-bordeaux.fr/dataexplorer/?ds=frim1"}]}